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Details

Stereochemistry ABSOLUTE
Molecular Formula C11H15N5O4
Molecular Weight 281.2679
Optical Activity UNSPECIFIED
Defined Stereocenters 4 / 4
E/Z Centers 0
Charge 0

SHOW SMILES / InChI
Structure of N-METHYLADENOSINE

SMILES

CNC1=NC=NC2=C1N=CN2[C@@H]3O[C@H](CO)[C@@H](O)[C@H]3O

InChI

InChIKey=VQAYFKKCNSOZKM-IOSLPCCCSA-N
InChI=1S/C11H15N5O4/c1-12-9-6-10(14-3-13-9)16(4-15-6)11-8(19)7(18)5(2-17)20-11/h3-5,7-8,11,17-19H,2H2,1H3,(H,12,13,14)/t5-,7-,8-,11-/m1/s1

HIDE SMILES / InChI

Molecular Formula C11H15N5O4
Molecular Weight 281.2679
Charge 0
Count
Stereochemistry ABSOLUTE
Additional Stereochemistry No
Defined Stereocenters 4 / 4
E/Z Centers 0
Optical Activity UNSPECIFIED

Description
Curator's Comment: The description was created based on several sources, including https://www.ncbi.nlm.nih.gov/pubmed/27027282 | https://www.ncbi.nlm.nih.gov/pubmed/24023349 | https://www.ncbi.nlm.nih.gov/pubmed/16033277

N-Methyladenosine (m6A) is a methylated adenine residue and an endogenous urinary nucleoside product of the degradation of transfer ribonucleic acid (tRNA). Adenosine methylation is directed by a large m6A methyltransferase complex containing METTL3 as the SAM-binding sub-unit. In vitro, this methyltransferase complex preferentially methylates RNA oligonucleotides containing GGACU and a similar preference was identified in vivo in mapped m6A sites in Rous sarcoma virus genomic RNA and in bovine prolactin mRNA. More recent studies have characterized other key components of the m6A methyltransferase complex in mammals, including METTL14, Wilms tumor 1 associated protein (WTAP) and KIAA1429. Following a 2010 speculation of m6A in mRNA being dynamic and reversible, the discovery of the first m6A demethylase, fat mass and obesity-associated protein (FTO) in 2011 confirmed this hypothesis and revitalized the interests in the study of m6A. A second m6A demethylase alkB homolog 5 (ALKBH5) was later discovered as well. The biological functions of m6A are mediated through a group of RNA binding proteins that specifically recognize the methylated adenosine on RNA. These binding proteins are named m6A readers. The YT521-B homology (YTH) domain family of proteins (YTHDF1, YTHDF2, YTHDF3, and YTHDC1) have been characterized as direct m6A readers and have a conserved m6A-binding pocket. These m6A readers, together with m6A methyltransferases (writers) and demethylases (erasers), establish a complex mechanism of m6A regulation in which writers and erasers determine the distributions of m6A on RNA, whereas readers mediate m6A-dependent functions. m6A has also been shown to mediate a structural switch termed m6A switch. Considering the versatile functions of m6A in various physiological processes, it is thus not surprising to find links between m6A and numerous human diseases; many originated from mutations or single nucleotide polymorphisms (SNPs) of cognate factors of m6A. The linkages between m6A and numerous cancer types have been indicated in reports that include stomach cancer, prostate cancer, breast cancer, pancreatic cancer, kidney cancer, mesothelioma, sarcoma, and leukemia. The depletion of METTL3 is known to cause apoptosis of cancer cells and reduce the invasiveness of cancer cells, while the activation of ALKBH5 by hypoxia was shown to cause cancer stem cell enrichment. m6A has also been indicated in the regulation of energy homeostasis and obesity, as FTO is a key regulatory gene for energy metabolism and obesity. SNPs of FTO have been shown to associate with body mass index in human populations and occurrence of obesity and diabetes. The influence of FTO on pre-adipocyte differentiation has been suggested. The connection between m6A and neuronal disorders has also been studied. For instance, neurodegenerative diseases may be affected by m6A as the cognate dopamine signaling was shown to be dependent on FTO and correct m6A methylation on key signaling transcripts. The mutations in HNRNPA2B1, a potential reader of m6A, have been known to cause neurodegeneration.

Approval Year

Targets

Targets

Primary TargetPharmacologyConditionPotency
Target ID: Q13686
Gene ID: 8846.0
Gene Symbol: ALKBH1
Target Organism: Homo sapiens (Human)
9.3 nM [Ki]
Conditions

Conditions

ConditionModalityTargetsHighest PhaseProduct
Diagnostic
Unknown

Approved Use

Unknown
Diagnostic
Unknown

Approved Use

Unknown
Diagnostic
Unknown

Approved Use

Unknown
PubMed

PubMed

TitleDatePubMed
Ribosome structure: localization of N6,N6-dimethyladenosine by electron microscopy of a ribosome-antibody complex.
1977 Apr
Cloning, sequencing and expression of a cDNA encoding the mouse L35a ribosomal protein during differentiation of murine erythroleukemia (MEL) cells.
2001
Transcriptional activation of prion protein gene in growth-arrested and differentiated mouse erythroleukemia and human neoplastic cells.
2001 Apr 1
Synthesis of oligoribonucleotides containing N6-alkyladenosine and 2-methylthio-N6-alkyladenosine.
2004 Sep
Modified nucleosides: an accurate tumour marker for clinical diagnosis of cancer, early detection and therapy control.
2006 Jun 5
Anticodon domain modifications contribute order to tRNA for ribosome-mediated codon binding.
2008 Jun 10
MTA is an Arabidopsis messenger RNA adenosine methylase and interacts with a homolog of a sex-specific splicing factor.
2008 May
The yfiC gene of E. coli encodes an adenine-N6 methyltransferase that specifically modifies A37 of tRNA1Val(cmo5UAC).
2009 Jun
Patents

Patents

Sample Use Guides

In Vivo Use Guide
Unknown
Route of Administration: Unknown
K562, K562IU, HT-29, MCF-7 were used for activity evaluation. Antitumor activity of the N-Methyladenosine was determined by their cytotoxic action on cultured tumor cells. Cytotoxicity assays were conducted by tetrazolium reduction of MTS with PMS (CellTiter Assay, Promega, Madison, WI). Logarithmically growing cells were plated in 0.1-mL aliquots in 96-well microtiter plates. Cells were plated at an initial density of about 50 000 cells/mL and allowed to acclimatize for 24 h. Cell suspensions were treated with various dilutions of compounds in triplicate, mixed well, and allowed to incubate for 48 h at 37 °C in an atmosphere of air and 5% CO2. To the cell suspension was added 20 mkL of tetrazolium reagent, the mixture was incubated for 3 h at 37 °C in an atmosphere of air and 5% CO2, and absorbance at 490 nm was read by microplate reader. Control plates with serial dilutions of cell types were counted as a control for the assay.
Substance Class Chemical
Created
by admin
on Fri Dec 15 19:44:10 GMT 2023
Edited
by admin
on Fri Dec 15 19:44:10 GMT 2023
Record UNII
CLE6G00625
Record Status Validated (UNII)
Record Version
  • Download
Name Type Language
N-METHYLADENOSINE
Systematic Name English
ADENOSINE, N-METHYL-
Systematic Name English
NSC-29409
Code English
(2R,3S,4R,5R)-2-HYDROXYMETHYL-5-(6-METHYLAMINO-PURIN-9-YL)-TETRAHYDRO-FURAN-3,4-DIOL
Systematic Name English
Code System Code Type Description
EPA CompTox
DTXSID6020858
Created by admin on Fri Dec 15 19:44:10 GMT 2023 , Edited by admin on Fri Dec 15 19:44:10 GMT 2023
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FDA UNII
CLE6G00625
Created by admin on Fri Dec 15 19:44:10 GMT 2023 , Edited by admin on Fri Dec 15 19:44:10 GMT 2023
PRIMARY
CAS
1867-73-8
Created by admin on Fri Dec 15 19:44:10 GMT 2023 , Edited by admin on Fri Dec 15 19:44:10 GMT 2023
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NSC
29409
Created by admin on Fri Dec 15 19:44:10 GMT 2023 , Edited by admin on Fri Dec 15 19:44:10 GMT 2023
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PUBCHEM
102175
Created by admin on Fri Dec 15 19:44:10 GMT 2023 , Edited by admin on Fri Dec 15 19:44:10 GMT 2023
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CHEBI
21891
Created by admin on Fri Dec 15 19:44:10 GMT 2023 , Edited by admin on Fri Dec 15 19:44:10 GMT 2023
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WIKIPEDIA
N6-Methyladenosine
Created by admin on Fri Dec 15 19:44:10 GMT 2023 , Edited by admin on Fri Dec 15 19:44:10 GMT 2023
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