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Details

Stereochemistry ACHIRAL
Molecular Formula C21H23Cl2N5O.2ClH
Molecular Weight 505.268
Optical Activity NONE
Defined Stereocenters 0 / 0
E/Z Centers 0
Charge 0

SHOW SMILES / InChI
Structure of RG-3039

SMILES

Cl.Cl.NC1=NC2=C(C(N)=N1)C(OCC3CCN(CC4=C(Cl)C=CC=C4Cl)CC3)=CC=C2

InChI

InChIKey=SRIYKPCSVUEGET-UHFFFAOYSA-N
InChI=1S/C21H23Cl2N5O.2ClH/c22-15-3-1-4-16(23)14(15)11-28-9-7-13(8-10-28)12-29-18-6-2-5-17-19(18)20(24)27-21(25)26-17;;/h1-6,13H,7-12H2,(H4,24,25,26,27);2*1H

HIDE SMILES / InChI

Molecular Formula C21H23Cl2N5O
Molecular Weight 432.346
Charge 0
Count
Stereochemistry ACHIRAL
Additional Stereochemistry No
Defined Stereocenters 0 / 0
E/Z Centers 0
Optical Activity NONE

Molecular Formula ClH
Molecular Weight 36.461
Charge 0
Count
Stereochemistry ACHIRAL
Additional Stereochemistry No
Defined Stereocenters 0 / 0
E/Z Centers 0
Optical Activity NONE

RG3039, also known as PF-06687859, is the first small molecule developed specifically for treatment of Spinal muscular atrophy (SMA). This drug is used in SMA patients that have reached early stage clinical trials. It was shown that RG3039 improved survival, function and motor unit pathologies in SMA mouse models. It is known, that RG3039 is a potent inhibitor of the mRNA decapping scavenger enzyme (DcpS). DcpS is a nuclear shuttling protein that binds and hydrolyzes the m(7)GpppN mRNA cap structure and a modulator of RNA metabolism. Therefore, DcpS represents an intrigueing therapeutic target for modulating gene expression by a small molecule. The exact therapeutic mechanism remains unknown.

CNS Activity

Curator's Comment: Known to be CNS penetrant in mouse. Human data not available

Approval Year

Targets

Targets

Primary TargetPharmacologyConditionPotency
Target ID: Q96C86
Gene ID: 28960.0
Gene Symbol: DCPS
Target Organism: Homo sapiens (Human)
0.069 nM [IC50]
Conditions

Conditions

ConditionModalityTargetsHighest PhaseProduct
Primary
Unknown

Approved Use

Unknown
PubMed

PubMed

TitleDatePubMed
Patents

Patents

Sample Use Guides

in mice: Mice received intraperitoneal (i.p.) injections starting on post natal day 1 (P1) defined as the day of birth. All treated litters were culled at P4 to a total of six pups. RG3039 was dissolved in distilled water (or saline in Ko laboratory) at appropriate concentrations for 2.5 µl volume/gram injection volume. Mice treated with RG3039 at 10 mg/kg/day showed increased weights and survival, which were not further increased by the 20 mg/kg dose.
Route of Administration: Intraperitoneal
To verify the ability of RG3039 to inhibit DcpS, it was examined DcpS enzyme activity in protein extracts isolated from a P10 SMA mouse brain treated in vitro with various doses of the drug. DcpS activity. Mouse brains were homogenized in lysis buffer (PBS, pH 7.4, 1% BSA, 0.1% IGEPAL CA-630 with protease and phosphatase inhibitors). For the DcpS enzyme decapping assay, 20 µg of tissue extract was mixed with 3 µm of biotinylated CAP substrate m7GpppA(N6) in the decapping buffer (50 mm Tris, pH 7.9, 100 mm MgCl2, 150 mm (NH4)2SO4) with a 10 µl total reaction volume. The reaction was terminated by adding 10 µl of 10 µm RG3039 to the reaction mixture. The resulting enzymatic reaction product, biotinylated ADP, was quantified using ELISA. As expected, RG3039 robustly inhibited DcpS enzyme activity in a dose-dependent manner with an IC50 = 3.4 nm.
Substance Class Chemical
Created
by admin
on Sat Dec 16 00:41:42 GMT 2023
Edited
by admin
on Sat Dec 16 00:41:42 GMT 2023
Record UNII
QS7LR4833J
Record Status Validated (UNII)
Record Version
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Name Type Language
RG-3039
Code English
PF-06687859 DIHYDROCHLORIDE
Code English
2,4-QUINAZOLINEDIAMINE, 5-((1-((2,6-DICHLOROPHENYL)METHYL)-4-PIPERIDINYL)METHOXY)-, HYDROCHLORIDE (1:2)
Systematic Name English
Classification Tree Code System Code
EU-Orphan Drug EU/3/13/1136
Created by admin on Sat Dec 16 00:41:42 GMT 2023 , Edited by admin on Sat Dec 16 00:41:42 GMT 2023
Code System Code Type Description
EU-Orphan Drug
EU/3/13/1136 (POSITIVE)
Created by admin on Sat Dec 16 00:41:42 GMT 2023 , Edited by admin on Sat Dec 16 00:41:42 GMT 2023
PRIMARY
EVMPD
SUB195643
Created by admin on Sat Dec 16 00:41:42 GMT 2023 , Edited by admin on Sat Dec 16 00:41:42 GMT 2023
PRIMARY
EU-Orphan Drug
EU/3/11/892(POSITIVE)
Created by admin on Sat Dec 16 00:41:42 GMT 2023 , Edited by admin on Sat Dec 16 00:41:42 GMT 2023
PRIMARY Treatment of 5q spinal muscular atrophy 30/08/2011 Positive
PUBCHEM
53258904
Created by admin on Sat Dec 16 00:41:42 GMT 2023 , Edited by admin on Sat Dec 16 00:41:42 GMT 2023
PRIMARY
SMS_ID
100000181836
Created by admin on Sat Dec 16 00:41:42 GMT 2023 , Edited by admin on Sat Dec 16 00:41:42 GMT 2023
PRIMARY
CAS
1466525-84-7
Created by admin on Sat Dec 16 00:41:42 GMT 2023 , Edited by admin on Sat Dec 16 00:41:42 GMT 2023
PRIMARY
FDA UNII
QS7LR4833J
Created by admin on Sat Dec 16 00:41:42 GMT 2023 , Edited by admin on Sat Dec 16 00:41:42 GMT 2023
PRIMARY
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ACTIVE MOIETY