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Details

Stereochemistry ACHIRAL
Molecular Formula C21H23Cl2N5O
Molecular Weight 432.346
Optical Activity NONE
Defined Stereocenters 0 / 0
E/Z Centers 0
Charge 0

SHOW SMILES / InChI
Structure of RG-3039 FREE BASE

SMILES

NC1=NC2=C(C(N)=N1)C(OCC3CCN(CC4=C(Cl)C=CC=C4Cl)CC3)=CC=C2

InChI

InChIKey=MNLHFGXIUJNDAF-UHFFFAOYSA-N
InChI=1S/C21H23Cl2N5O/c22-15-3-1-4-16(23)14(15)11-28-9-7-13(8-10-28)12-29-18-6-2-5-17-19(18)20(24)27-21(25)26-17/h1-6,13H,7-12H2,(H4,24,25,26,27)

HIDE SMILES / InChI

Molecular Formula C21H23Cl2N5O
Molecular Weight 432.346
Charge 0
Count
Stereochemistry ACHIRAL
Additional Stereochemistry No
Defined Stereocenters 0 / 0
E/Z Centers 0
Optical Activity NONE

RG3039, also known as PF-06687859, is the first small molecule developed specifically for treatment of Spinal muscular atrophy (SMA). This drug is used in SMA patients that have reached early stage clinical trials. It was shown that RG3039 improved survival, function and motor unit pathologies in SMA mouse models. It is known, that RG3039 is a potent inhibitor of the mRNA decapping scavenger enzyme (DcpS). DcpS is a nuclear shuttling protein that binds and hydrolyzes the m(7)GpppN mRNA cap structure and a modulator of RNA metabolism. Therefore, DcpS represents an intrigueing therapeutic target for modulating gene expression by a small molecule. The exact therapeutic mechanism remains unknown.

CNS Activity

Curator's Comment: Known to be CNS penetrant in mouse. Human data not available

Approval Year

Targets

Targets

Primary TargetPharmacologyConditionPotency
Target ID: Q96C86
Gene ID: 28960.0
Gene Symbol: DCPS
Target Organism: Homo sapiens (Human)
0.069 nM [IC50]
Conditions

Conditions

ConditionModalityTargetsHighest PhaseProduct
Primary
Unknown

Approved Use

Unknown
PubMed

PubMed

TitleDatePubMed
The DcpS inhibitor RG3039 improves motor function in SMA mice.
2013 Oct 15
The DcpS inhibitor RG3039 improves survival, function and motor unit pathologies in two SMA mouse models.
2013 Oct 15
Patents

Patents

Sample Use Guides

in mice: Mice received intraperitoneal (i.p.) injections starting on post natal day 1 (P1) defined as the day of birth. All treated litters were culled at P4 to a total of six pups. RG3039 was dissolved in distilled water (or saline in Ko laboratory) at appropriate concentrations for 2.5 µl volume/gram injection volume. Mice treated with RG3039 at 10 mg/kg/day showed increased weights and survival, which were not further increased by the 20 mg/kg dose.
Route of Administration: Intraperitoneal
To verify the ability of RG3039 to inhibit DcpS, it was examined DcpS enzyme activity in protein extracts isolated from a P10 SMA mouse brain treated in vitro with various doses of the drug. DcpS activity. Mouse brains were homogenized in lysis buffer (PBS, pH 7.4, 1% BSA, 0.1% IGEPAL CA-630 with protease and phosphatase inhibitors). For the DcpS enzyme decapping assay, 20 µg of tissue extract was mixed with 3 µm of biotinylated CAP substrate m7GpppA(N6) in the decapping buffer (50 mm Tris, pH 7.9, 100 mm MgCl2, 150 mm (NH4)2SO4) with a 10 µl total reaction volume. The reaction was terminated by adding 10 µl of 10 µm RG3039 to the reaction mixture. The resulting enzymatic reaction product, biotinylated ADP, was quantified using ELISA. As expected, RG3039 robustly inhibited DcpS enzyme activity in a dose-dependent manner with an IC50 = 3.4 nm.
Substance Class Chemical
Created
by admin
on Fri Dec 15 19:48:00 GMT 2023
Edited
by admin
on Fri Dec 15 19:48:00 GMT 2023
Record UNII
KSV93L7URW
Record Status Validated (UNII)
Record Version
  • Download
Name Type Language
RG-3039 FREE BASE
Code English
5-(1-(2,6-DICHLOROBENZYL)-PIPERIDIN-4-YL)METHOXYQUINAZOLINE-2,4-DIAMINE
Systematic Name English
D-157495
Common Name English
PF-06687859
Code English
D157495
Code English
2,4-QUINAZOLINEDIAMINE, 5-((1-((2,6-DICHLOROPHENYL)METHYL)-4-PIPERIDINYL)METHOXY)-
Systematic Name English
Classification Tree Code System Code
FDA ORPHAN DRUG 289509
Created by admin on Fri Dec 15 19:48:00 GMT 2023 , Edited by admin on Fri Dec 15 19:48:00 GMT 2023
Code System Code Type Description
EPA CompTox
DTXSID00143380
Created by admin on Fri Dec 15 19:48:00 GMT 2023 , Edited by admin on Fri Dec 15 19:48:00 GMT 2023
PRIMARY
CAS
1005504-62-0
Created by admin on Fri Dec 15 19:48:00 GMT 2023 , Edited by admin on Fri Dec 15 19:48:00 GMT 2023
PRIMARY
FDA UNII
KSV93L7URW
Created by admin on Fri Dec 15 19:48:00 GMT 2023 , Edited by admin on Fri Dec 15 19:48:00 GMT 2023
PRIMARY
PUBCHEM
53258905
Created by admin on Fri Dec 15 19:48:00 GMT 2023 , Edited by admin on Fri Dec 15 19:48:00 GMT 2023
PRIMARY
SMS_ID
100000181829
Created by admin on Fri Dec 15 19:48:00 GMT 2023 , Edited by admin on Fri Dec 15 19:48:00 GMT 2023
PRIMARY
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