U.S. Department of Health & Human Services Divider Arrow National Institutes of Health Divider Arrow NCATS

Details

Stereochemistry ACHIRAL
Molecular Formula C17H28N4O3
Molecular Weight 336.4292
Optical Activity NONE
Defined Stereocenters 0 / 0
E/Z Centers 0
Charge 0

SHOW SMILES / InChI
Structure of KDM5-C70

SMILES

CCOC(=O)C1=CC=NC(CNCC(=O)N(CC)CCN(C)C)=C1

InChI

InChIKey=WCILOMUUNVPIKQ-UHFFFAOYSA-N
InChI=1S/C17H28N4O3/c1-5-21(10-9-20(3)4)16(22)13-18-12-15-11-14(7-8-19-15)17(23)24-6-2/h7-8,11,18H,5-6,9-10,12-13H2,1-4H3

HIDE SMILES / InChI

Molecular Formula C17H28N4O3
Molecular Weight 336.4292
Charge 0
Count
Stereochemistry ACHIRAL
Additional Stereochemistry No
Defined Stereocenters 0 / 0
E/Z Centers 0
Optical Activity NONE

KDM5-C70 is an ethyl ester derivative of KDM5-C49, which is a potent and selective inhibitor of Jumonji AT-Rich Interactive Domain 1 (JARID1) histone demethylases. The highly polar carboxylate group of KDM5-C49 restricts its cellular permeability; therefore KDM5-C70 was developed as a pro-drug, masking the polarity of the acid group of the KDM5-C49, for cellular assays and in vivo use. It has IC50 <1 uM for KDM5B (or PLU1) and UTX in histone lysine demethylase AlphaLISA assays, very good selectivity over JMJD1B, JMJD2A, JMJD2B and JMJD3. It has IC50 <1 uM for inhibiting demethylation of H3K4 in U2OS human osteosarcoma cell line. KDM5-C70 also suppresses human breast adenocarcinoma MCF7 tumor cell proliferation with IC50 < 1 uM. KDM5-C70 has shown antiproliferative effects in myeloma cells, leading to genome-wide elevation of H3K4me3 levels. KDM5-C70 treatment increased global H3K4me3 levels in HeLa cells. In this case, KDM5-C70 led to decreased 3′UTR length of DICER1. Although the cellular potency of KDM5-C70 is weak and about one to two orders of magnitude beyond the desired cellular potency characterizing high quality chemical probes, the correlated antiproliferative phenotype and the favorable in vitro selectivity profile suggest that further optimization of this scaffold could potentially lead to valuable tools for interrogating KDM5 phenotypes in human biology.

Approval Year

Targets

Targets

Primary TargetPharmacologyConditionPotency
Conditions

Conditions

ConditionModalityTargetsHighest PhaseProduct
Primary
Unknown

Approved Use

Unknown
Primary
Unknown

Approved Use

Unknown
PubMed

PubMed

TitleDatePubMed
Patents

Patents

Sample Use Guides

In Vivo Use Guide
Unknown
Route of Administration: Unknown
KDM5-C70 (10 uM) treatment increased global H3K4me3 levels in HeLa cells
Substance Class Chemical
Created
by admin
on Sat Dec 16 12:51:26 GMT 2023
Edited
by admin
on Sat Dec 16 12:51:26 GMT 2023
Record UNII
4288BE400F
Record Status Validated (UNII)
Record Version
  • Download
Name Type Language
KDM5-C70
Common Name English
4-PYRIDINECARBOXYLIC ACID, 2-(((2-((2-(DIMETHYLAMINO)ETHYL)ETHYLAMINO)-2-OXOETHYL)AMINO)METHYL)-, ETHYL ESTER
Systematic Name English
Code System Code Type Description
FDA UNII
4288BE400F
Created by admin on Sat Dec 16 12:51:26 GMT 2023 , Edited by admin on Sat Dec 16 12:51:26 GMT 2023
PRIMARY
PUBCHEM
90094283
Created by admin on Sat Dec 16 12:51:26 GMT 2023 , Edited by admin on Sat Dec 16 12:51:26 GMT 2023
PRIMARY
CAS
1596348-32-1
Created by admin on Sat Dec 16 12:51:26 GMT 2023 , Edited by admin on Sat Dec 16 12:51:26 GMT 2023
PRIMARY
Related Record Type Details
METABOLITE ACTIVE -> PRODRUG