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Details

Stereochemistry RACEMIC
Molecular Formula C41H43N3O7S
Molecular Weight 721.861
Optical Activity ( + / - )
Defined Stereocenters 3 / 3
E/Z Centers 0
Charge 0

SHOW SMILES / InChI
Structure of TUBACIN

SMILES

OCC1=CC=C(C=C1)[C@@H]2C[C@H](CSC3=NC(=C(O3)C4=CC=CC=C4)C5=CC=CC=C5)O[C@@H](O2)C6=CC=C(NC(=O)CCCCCCC(=O)NO)C=C6

InChI

InChIKey=BHUZLJOUHMBZQY-YXQOSMAKSA-N
InChI=1S/C41H43N3O7S/c45-26-28-17-19-29(20-18-28)35-25-34(27-52-41-43-38(30-11-5-3-6-12-30)39(51-41)31-13-7-4-8-14-31)49-40(50-35)32-21-23-33(24-22-32)42-36(46)15-9-1-2-10-16-37(47)44-48/h3-8,11-14,17-24,34-35,40,45,48H,1-2,9-10,15-16,25-27H2,(H,42,46)(H,44,47)/t34-,35+,40+/m1/s1

HIDE SMILES / InChI

Molecular Formula C41H43N3O7S
Molecular Weight 721.861
Charge 0
Count
Stereochemistry ABSOLUTE
Additional Stereochemistry No
Defined Stereocenters 3 / 3
E/Z Centers 0
Optical Activity UNSPECIFIED

Description
Curator's Comment: Description was created based on several sources, including https://www.ncbi.nlm.nih.gov/pubmed/15937109

Tubacin is a highly potent and selective, reversible, cell-permeable inhibitor of HDAC6 with an IC50 value of 4 nM. Tubacin inhibits α- tubulin deacetylation in mammalian cells. Tubacin is specific for the tubulin deacetylase activity of HDAC6. The effects of tubacin has been studied in hematologic malignancies, such as multiple myeloma and leukemia cell lines. Overexpression of HDAC6 in primary lymphocytes and T cell lines increase cell migration in response to cytokines. Knockdown of HDAC6 in T cells decreased chemotactic mobility independent of its enzymatic activity. Furthermore, treatment of multiple myeloma cells with tubacin resulted in decreased cell growth at an IC50 of 2–5uM. In terms of toxicity to normal bone marrow and blood cells, treatment of peripheral blood mononuclear cells (PBMC) and bone marrow progenitor cells (BMPC) with tubacin (5uM) for 12 hours showed that constitutive expression of HDAC6 is higher in BMPCs than PBMCs. Furthermore, acetylation of α-tubulin was markedly enhanced by tubacin in BMPCs but not in PBMCs. Bortezomib and tubacin together induced synergistic antitumor activity in multiple myeloma cells and primary bone marrow plasma cells. Published data therefore provide support for combined therapy in clinical trials for patients with multiple myeloma.

Approval Year

Targets

Targets

Primary TargetPharmacologyConditionPotency
4.0 nM [IC50]
Conditions

Conditions

ConditionModalityTargetsHighest PhaseProduct
Primary
Unknown

Approved Use

Unknown
Primary
Unknown

Approved Use

Unknown
PubMed

PubMed

TitleDatePubMed
Domain-selective small-molecule inhibitor of histone deacetylase 6 (HDAC6)-mediated tubulin deacetylation.
2003 Apr 15
Ubiquitin proteasome system stress underlies synergistic killing of ovarian cancer cells by bortezomib and a novel HDAC6 inhibitor.
2008 Nov 15
Grouping of histone deacetylase inhibitors and other toxicants disturbing neural crest migration by transcriptional profiling.
2015 Sep
Patents

Sample Use Guides

Mice: mice were treated for 4 weeks intraperitoneally with 50 mg/kg/day tubacin
Route of Administration: Intraperitoneal
Tubacin inhibited the growth of ALL cells in a dose-dependent manner, with 50% inhibitory concentrations (IC50) ranging from 1.2 to 2 uM.
Substance Class Chemical
Created
by admin
on Sat Dec 16 10:31:17 GMT 2023
Edited
by admin
on Sat Dec 16 10:31:17 GMT 2023
Record UNII
02C2G1D30D
Record Status Validated (UNII)
Record Version
  • Download
Name Type Language
TUBACIN
Common Name English
REL-N1-(4-((2R,4R,6S)-4-(((4,5-DIPHENYL-2-OXAZOLYL)THIO)METHYL)-6-(4-(HYDROXYMETHYL)PHENYL)-1,3-DIOXAN-2-YL)PHENYL)-N8-HYDROXYOCTANEDIAMIDE
Systematic Name English
OCTANEDIAMIDE, N1-(4-((2R,4R,6S)-4-(((4,5-DIPHENYL-2-OXAZOLYL)THIO)METHYL)-6-(4-(HYDROXYMETHYL)PHENYL)-1,3-DIOXAN-2-YL)PHENYL)-N8-HYDROXY-, REL-
Systematic Name English
Code System Code Type Description
CAS
537049-40-4
Created by admin on Sat Dec 16 10:31:17 GMT 2023 , Edited by admin on Sat Dec 16 10:31:17 GMT 2023
PRIMARY
FDA UNII
02C2G1D30D
Created by admin on Sat Dec 16 10:31:17 GMT 2023 , Edited by admin on Sat Dec 16 10:31:17 GMT 2023
PRIMARY
PUBCHEM
6675804
Created by admin on Sat Dec 16 10:31:17 GMT 2023 , Edited by admin on Sat Dec 16 10:31:17 GMT 2023
PRIMARY
Related Record Type Details
ACTIVE MOIETY