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Details

Stereochemistry ACHIRAL
Molecular Formula C13H14N2O
Molecular Weight 214.2631
Optical Activity NONE
Defined Stereocenters 0 / 0
E/Z Centers 0
Charge 0

SHOW SMILES / InChI
Structure of HARMALINE

SMILES

COC1=CC2=C(C=C1)C3=C(N2)C(C)=NCC3

InChI

InChIKey=RERZNCLIYCABFS-UHFFFAOYSA-N
InChI=1S/C13H14N2O/c1-8-13-11(5-6-14-8)10-4-3-9(16-2)7-12(10)15-13/h3-4,7,15H,5-6H2,1-2H3

HIDE SMILES / InChI
Harmaline is a fluorescent psychoactive indole alkaloid from the group of harmala alkaloids and beta-carbolines. It is a partially hydrogenated form of harmine. Harmaline is produced by various plants including Peganum harmala aswell as Banisteriopsis caapi. Harmaline has been investigated as an anti-cancer agent and for the treatment of dementia in rats. However, Harmaline is known to induce tremors in rats.

CNS Activity

Curator's Comment: the referenced study was conducted in rat

Approval Year

Targets

Targets

Primary TargetPharmacologyConditionPotency
Target ID: P50135
Gene ID: 3176.0
Gene Symbol: HNMT
Target Organism: Homo sapiens (Human)
Target ID: CHEMBL2311221
Target ID: P04798
Gene ID: 1543.0
Gene Symbol: CYP1A1
Target Organism: Homo sapiens (Human)
Conditions

Conditions

ConditionModalityTargetsHighest PhaseProduct
Primary
Unknown

Approved Use

Unknown
Primary
Unknown

Approved Use

Unknown
PubMed

PubMed

TitleDatePubMed
Steroid hormone activity of flavonoids and related compounds.
2000 Jul
Pharmañopo-psychonautics: human intranasal, sublingual, intrarectal, pulmonary and oral pharmacology of bufotenine.
2001 Jul-Sep
Harmaline induces different motor effects on facial vs. skeletal-motor systems in alert cats.
2001 Nov
Comparison of two intracranial self-stimulation (ICSS) paradigms in C57BL/6 mice: head-dipping and place-learning.
2001 Nov 29
3-acetylpyridine reduces tongue protrusion force but does not abolish lick rhythm in the rat.
2001 Nov 30
Pharmepéna-Psychonautics: Human intranasal, sublingual and oral pharmacology of 5-methoxy-N,N-dimethyl-tryptamine.
2001 Oct-Dec
Analysis of Cx36 knockout does not support tenet that olivary gap junctions are required for complex spike synchronization and normal motor performance.
2002 Dec
An in vitro evaluation of human DNA topoisomerase I inhibition by Peganum harmala L. seeds extract and its beta-carboline alkaloids.
2002 Jan-Apr
Effect of acute caffeine on severity of harmaline induced tremor in rats.
2002 Jun 14
Experimental toxicity of Peganum harmala seeds.
2002 Mar
Effect of R-(-)-deprenyl and harmaline on dopamine- and peroxynitrite-induced membrane permeability transition in brain mitochondria.
2002 Mar
Kinetics of binding of [(3)H]glycine to transport proteins in channel catfish brain.
2002 Mar-Apr
Affinitive separation and on-line identification of antitumor components from Peganum nigellastrum by coupling a chromatographic column of target analogue imprinted polymer with mass spectrometry.
2002 May 15
Exudation of fluorescent beta-carbolines from Oxalis tuberosa L roots.
2002 Nov
Monoamine oxidase inhibitor poisoning resulting from Internet misinformation on illicit substances.
2004
Citalopram, a selective serotonin reuptake inhibitor augments harmaline-induced tremor in rats.
2004 Aug 12
Toxicological evaluation of the staircase test for assessing fine motor movements.
2004 Jan-Feb
Allele-dependent changes of olivocerebellar circuit properties in the absence of the voltage-gated potassium channels Kv3.1 and Kv3.3.
2004 Jun
Dopamine transporter-mediated cytotoxicity of beta-carbolinium derivatives related to Parkinson's disease: relationship to transporter-dependent uptake.
2004 May
SL25.1131 [3(S),3a(S)-3-methoxymethyl-7-[4,4,4-trifluorobutoxy]-3,3a,4,5-tetrahydro-1,3-oxazolo[3,4-a]quinolin-1-one], a new, reversible, and mixed inhibitor of monoamine oxidase-A and monoamine oxidase-B: biochemical and behavioral profile.
2004 Sep
Can Zipf's law be adapted to normalize microarrays?
2005 Feb 23
Exacerbation of harmaline-induced tremor by imipramine.
2005 May
Beta-carboline and quinoline alkaloids in root cultures and intact plants of Peganum harmala.
2005 May-Jun
Prediction of estrogen receptor agonists and characterization of associated molecular descriptors by statistical learning methods.
2006 Nov
Effects of beta-carboline alkaloids on the object recognition task in mice.
2006 Oct 26
A study on the antitumoral and differentiation effects of peganum harmala derivatives in combination with ATRA on leukaemic cells.
2007 Jul
Determination of beta-carboline alkaloids in foods and beverages by high-performance liquid chromatography with electrochemical detection at a glassy carbon electrode modified with carbon nanotubes.
2007 Mar 7
Cytotoxicity of the beta-carboline alkaloids harmine and harmaline in human cell assays in vitro.
2008 Aug
Patents

Sample Use Guides

In Vivo Use Guide
Curator's Comment: the referenced study was conducted in rat
Rats of vascular dementia were established with bilateral carotid artery ligation. After 30 days rats were treated nicergoline tablets 25, 12.5 and 6.25 mg/kg per day of total alkaloids of harmaline for 30 days. Learning and memory abilities were tested by Morris water maze, histomorphology in the hippocampal CA1 area was observed by HE staining, BAX and BCL-2 protein expression in the hippocampal CA1 area were detected by immunohistochemistry. 25 mg/kg of total alkaloids of harmaline shortened the incubation period in the third and fourth day significantly, and 12.5 mg/kg shortened the incubation period in the fourth day. Total alkaloids of harmaline improved the neurons pathological changes of the rats in the hippocampus CA1 area, 25 and 12.5 mg/kg of total alkaloids of harmaline downregulated the expression of apoptosis proteins BAX, upregulated the protein expression of BCL-2.
Route of Administration: Oral
Human hepatoma HepG2 cells were maintained in Dulbecco's modified Eagle's medium, supplemented with 10% heat-inactivated fetal bovine serum, 2 mM L-glutamine, 100 IU/mL penicillin, and 100 micro-g/mL streptomycin and incubated at 37 deg-C under a 5% CO2 atmosphere. Cells were treated in serum-free medium with TCDD in presence of various concentrations of harmaline dissolved in up to 0.05% DMSO, and incubated for 24 hours. The effect of harmaline on HepG2 cell viability was determined by measuring the capacity of reducing enzymes present in viable cells to convert MTT to formazan crystals. At a concentration range of 0 25 micro-M, harmaline did not significantly affect cell viability when incubated with human hepatoma cells for 24 h either in presence or absence of TCDD.
Name Type Language
NSC-407285
Preferred Name English
HARMALINE
HSDB   MART.   MI  
Systematic Name English
HARMALINE [MART.]
Common Name English
HARMALINE [HSDB]
Common Name English
7-METHOXY-1-METHYL-4,9-DIHYDRO-3H-PYRIDO(3,4-B)INDOLE
Systematic Name English
HARMALINE [MI]
Common Name English
Classification Tree Code System Code
WIKIPEDIA TiHKAL
Created by admin on Mon Mar 31 17:33:30 GMT 2025 , Edited by admin on Mon Mar 31 17:33:30 GMT 2025
Code System Code Type Description
CHEBI
28172
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PRIMARY
MERCK INDEX
m5916
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PRIMARY Merck Index
CAS
304-21-2
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PRIMARY
ECHA (EC/EINECS)
206-152-6
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PRIMARY
MESH
D006246
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PRIMARY
DRUG BANK
DB13875
Created by admin on Mon Mar 31 17:33:30 GMT 2025 , Edited by admin on Mon Mar 31 17:33:30 GMT 2025
PRIMARY
FDA UNII
CN58I4TOET
Created by admin on Mon Mar 31 17:33:30 GMT 2025 , Edited by admin on Mon Mar 31 17:33:30 GMT 2025
PRIMARY
PUBCHEM
3564
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PRIMARY
NSC
407285
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PRIMARY
EPA CompTox
DTXSID8041038
Created by admin on Mon Mar 31 17:33:30 GMT 2025 , Edited by admin on Mon Mar 31 17:33:30 GMT 2025
PRIMARY
WIKIPEDIA
HARMALINE
Created by admin on Mon Mar 31 17:33:30 GMT 2025 , Edited by admin on Mon Mar 31 17:33:30 GMT 2025
PRIMARY
HSDB
7645
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PRIMARY