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Details

Stereochemistry ABSOLUTE
Molecular Formula C10H14ClFN5O12P3
Molecular Weight 543.617
Optical Activity UNSPECIFIED
Defined Stereocenters 4 / 4
E/Z Centers 0
Charge 0

SHOW SMILES / InChI
Structure of Clofarabine triphosphate

SMILES

NC1=NC(Cl)=NC2=C1N=CN2[C@@H]3O[C@H](COP(O)(=O)OP(O)(=O)OP(O)(O)=O)[C@@H](O)[C@@H]3F

InChI

InChIKey=ILZCVFJUTWHERD-AYQXTPAHSA-N
InChI=1S/C10H14ClFN5O12P3/c11-10-15-7(13)5-8(16-10)17(2-14-5)9-4(12)6(18)3(27-9)1-26-31(22,23)29-32(24,25)28-30(19,20)21/h2-4,6,9,18H,1H2,(H,22,23)(H,24,25)(H2,13,15,16)(H2,19,20,21)/t3-,4+,6-,9-/m1/s1

HIDE SMILES / InChI

Description
Curator's Comment: description was created based on several sources, including http://www.accessdata.fda.gov/drugsatfda_docs/label/2015/021673s024lbl.pdf

Clofarabine is a anti-cancer drug which was approved by FDA for the treatment of pediatric patients with relapsed or refractory acute lymphoblastic leukemia. After crossing the cell membrane the drug is rapidly metabolized by deoxycytidine kinase to diphosphate and triphosphate metabolites and these metabolites reversibly inhibit hRNR by binding to alpha subunit. Also the triphosphate is incorporated to DNA where it acts as a chain terminator.

CNS Activity

Curator's Comment: Only a small amount of the drug was shown to cross the blood brain barrier in non-human primates.

Approval Year

TargetsConditions

Conditions

ConditionModalityTargetsHighest PhaseProduct
Primary
CLOLAR

Approved Use

Clolar® (clofarabine) Injection is indicated for the treatment of pediatric patients 1 to 21 years old with relapsed or refractory acute lymphoblastic leukemia after at least two prior regimens.

Launch Date

2004
Cmax

Cmax

ValueDoseCo-administeredAnalytePopulation
308 ng/mL
40 mg/m² 1 times / day multiple, intravenous
dose: 40 mg/m²
route of administration: Intravenous
experiment type: MULTIPLE
co-administered: CYTARABINE
CLOFARABINE plasma
Homo sapiens
population: UNHEALTHY
age: ADULT
sex: FEMALE / MALE
food status: UNKNOWN
598.8 ng/mL
52 mg/m² 1 times / day multiple, intravenous
dose: 52 mg/m²
route of administration: Intravenous
experiment type: MULTIPLE
co-administered:
CLOFARABINE plasma
Homo sapiens
population: UNHEALTHY
age: CHILD
sex: FEMALE / MALE
food status:
683.5 ng/mL
52 mg/m² single, intravenous
dose: 52 mg/m²
route of administration: Intravenous
experiment type: SINGLE
co-administered:
CLOFARABINE plasma
Homo sapiens
population: UNHEALTHY
age: CHILD
sex: FEMALE / MALE
food status:
AUC

AUC

ValueDoseCo-administeredAnalytePopulation
1793 ng × h/mL
40 mg/m² 1 times / day multiple, intravenous
dose: 40 mg/m²
route of administration: Intravenous
experiment type: MULTIPLE
co-administered: CYTARABINE
CLOFARABINE plasma
Homo sapiens
population: UNHEALTHY
age: ADULT
sex: FEMALE / MALE
food status: UNKNOWN
28 ng × h/mL
40 mg/m² 1 times / day multiple, intravenous
dose: 40 mg/m²
route of administration: Intravenous
experiment type: MULTIPLE
co-administered:
CLOFARABINE blood
Homo sapiens
population: UNHEALTHY
age: CHILD
sex: UNKNOWN
food status: UNKNOWN
1462.8 ng × h/mL
52 mg/m² 1 times / day multiple, intravenous
dose: 52 mg/m²
route of administration: Intravenous
experiment type: MULTIPLE
co-administered:
CLOFARABINE plasma
Homo sapiens
population: UNHEALTHY
age: CHILD
sex: FEMALE / MALE
food status:
2358.2 ng × h/mL
52 mg/m² single, intravenous
dose: 52 mg/m²
route of administration: Intravenous
experiment type: SINGLE
co-administered:
CLOFARABINE plasma
Homo sapiens
population: UNHEALTHY
age: CHILD
sex: FEMALE / MALE
food status:
T1/2

T1/2

ValueDoseCo-administeredAnalytePopulation
4.9 h
40 mg/m² 1 times / day multiple, intravenous
dose: 40 mg/m²
route of administration: Intravenous
experiment type: MULTIPLE
co-administered: CYTARABINE
CLOFARABINE plasma
Homo sapiens
population: UNHEALTHY
age: ADULT
sex: FEMALE / MALE
food status: UNKNOWN
1.5 h
40 mg/m² 1 times / day multiple, intravenous
dose: 40 mg/m²
route of administration: Intravenous
experiment type: MULTIPLE
co-administered:
CLOFARABINE blood
Homo sapiens
population: UNHEALTHY
age: CHILD
sex: UNKNOWN
food status: UNKNOWN
1.977 h
52 mg/m² 1 times / day multiple, intravenous
dose: 52 mg/m²
route of administration: Intravenous
experiment type: MULTIPLE
co-administered:
CLOFARABINE plasma
Homo sapiens
population: UNHEALTHY
age: CHILD
sex: FEMALE / MALE
food status:
3.933 h
52 mg/m² single, intravenous
dose: 52 mg/m²
route of administration: Intravenous
experiment type: SINGLE
co-administered:
CLOFARABINE plasma
Homo sapiens
population: UNHEALTHY
age: CHILD
sex: FEMALE / MALE
food status:
Doses

Doses

DosePopulationAdverse events​
55 mg/m2 1 times / day multiple, intravenous
Highest studied dose
Dose: 55 mg/m2, 1 times / day
Route: intravenous
Route: multiple
Dose: 55 mg/m2, 1 times / day
Sources:
unhealthy, 42 years
Health Status: unhealthy
Age Group: 42 years
Sex: M+F
Sources:
Other AEs: Nausea, Diarrhea...
Other AEs:
Nausea (grade 1-2, 2 patients)
Diarrhea (grade 1, 3 patients)
Hepatotoxicity (grade 3, 2 patients)
Sources:
40 mg/m2 1 times / day multiple, intravenous
MTD
Dose: 40 mg/m2, 1 times / day
Route: intravenous
Route: multiple
Dose: 40 mg/m2, 1 times / day
Sources:
unhealthy, 42 years
Health Status: unhealthy
Age Group: 42 years
Sex: M+F
Sources:
Other AEs: Nausea, Fatigue...
Other AEs:
Nausea (grade 1-2, 3 patients)
Fatigue (grade 3, 1 patient)
Diarrhea (grade 1, 2 patients)
Cramp (grade 1, 1 patient)
Anorexia (grade 1, 1 patient)
Mucositis (grade 1, 1 patient)
Edema (grade 1, 1 patient)
Hepatotoxicity (grade 3-4, 4 patients)
Sources:
2 mg/m2 1 times / day multiple, intravenous
MTD
Dose: 2 mg/m2, 1 times / day
Route: intravenous
Route: multiple
Dose: 2 mg/m2, 1 times / day
Sources:
unhealthy, 51 years
Health Status: unhealthy
Age Group: 51 years
Sex: M+F
Sources:
DLT: Myelosuppression...
Dose limiting toxicities:
Myelosuppression (grade 3, 2 patients)
Sources:
6 mg 1 times / day multiple, oral
Highest studied dose
Dose: 6 mg, 1 times / day
Route: oral
Route: multiple
Dose: 6 mg, 1 times / day
Sources:
unhealthy, 60-76 years
Health Status: unhealthy
Age Group: 60-76 years
Sources:
Other AEs: Nausea, Hypoalbuminemia...
Other AEs:
Nausea (grade 1-2, 1 patient)
Hypoalbuminemia (grade 1-2, 1 patient)
Blood bilirubin decreased (grade 1-2, 1 patient)
Lymphopenia (grade 3-4)
Sources:
70 mg/m2 1 times / day multiple, intravenous
Highest studied dose
Dose: 70 mg/m2, 1 times / day
Route: intravenous
Route: multiple
Dose: 70 mg/m2, 1 times / day
Sources:
unhealthy, child
Health Status: unhealthy
Age Group: child
Sources:
Other AEs: Hyperbilirubinemia, Vomiting...
Other AEs:
Hyperbilirubinemia (grade 4, 2 patients)
Vomiting (grade 2-3, 2 patients)
Maculopapular rash (grade 3, 2 patients)
Sources:
AEs

AEs

AESignificanceDosePopulation
Diarrhea grade 1, 3 patients
55 mg/m2 1 times / day multiple, intravenous
Highest studied dose
Dose: 55 mg/m2, 1 times / day
Route: intravenous
Route: multiple
Dose: 55 mg/m2, 1 times / day
Sources:
unhealthy, 42 years
Health Status: unhealthy
Age Group: 42 years
Sex: M+F
Sources:
Nausea grade 1-2, 2 patients
55 mg/m2 1 times / day multiple, intravenous
Highest studied dose
Dose: 55 mg/m2, 1 times / day
Route: intravenous
Route: multiple
Dose: 55 mg/m2, 1 times / day
Sources:
unhealthy, 42 years
Health Status: unhealthy
Age Group: 42 years
Sex: M+F
Sources:
Hepatotoxicity grade 3, 2 patients
55 mg/m2 1 times / day multiple, intravenous
Highest studied dose
Dose: 55 mg/m2, 1 times / day
Route: intravenous
Route: multiple
Dose: 55 mg/m2, 1 times / day
Sources:
unhealthy, 42 years
Health Status: unhealthy
Age Group: 42 years
Sex: M+F
Sources:
Anorexia grade 1, 1 patient
40 mg/m2 1 times / day multiple, intravenous
MTD
Dose: 40 mg/m2, 1 times / day
Route: intravenous
Route: multiple
Dose: 40 mg/m2, 1 times / day
Sources:
unhealthy, 42 years
Health Status: unhealthy
Age Group: 42 years
Sex: M+F
Sources:
Cramp grade 1, 1 patient
40 mg/m2 1 times / day multiple, intravenous
MTD
Dose: 40 mg/m2, 1 times / day
Route: intravenous
Route: multiple
Dose: 40 mg/m2, 1 times / day
Sources:
unhealthy, 42 years
Health Status: unhealthy
Age Group: 42 years
Sex: M+F
Sources:
Edema grade 1, 1 patient
40 mg/m2 1 times / day multiple, intravenous
MTD
Dose: 40 mg/m2, 1 times / day
Route: intravenous
Route: multiple
Dose: 40 mg/m2, 1 times / day
Sources:
unhealthy, 42 years
Health Status: unhealthy
Age Group: 42 years
Sex: M+F
Sources:
Mucositis grade 1, 1 patient
40 mg/m2 1 times / day multiple, intravenous
MTD
Dose: 40 mg/m2, 1 times / day
Route: intravenous
Route: multiple
Dose: 40 mg/m2, 1 times / day
Sources:
unhealthy, 42 years
Health Status: unhealthy
Age Group: 42 years
Sex: M+F
Sources:
Diarrhea grade 1, 2 patients
40 mg/m2 1 times / day multiple, intravenous
MTD
Dose: 40 mg/m2, 1 times / day
Route: intravenous
Route: multiple
Dose: 40 mg/m2, 1 times / day
Sources:
unhealthy, 42 years
Health Status: unhealthy
Age Group: 42 years
Sex: M+F
Sources:
Nausea grade 1-2, 3 patients
40 mg/m2 1 times / day multiple, intravenous
MTD
Dose: 40 mg/m2, 1 times / day
Route: intravenous
Route: multiple
Dose: 40 mg/m2, 1 times / day
Sources:
unhealthy, 42 years
Health Status: unhealthy
Age Group: 42 years
Sex: M+F
Sources:
Fatigue grade 3, 1 patient
40 mg/m2 1 times / day multiple, intravenous
MTD
Dose: 40 mg/m2, 1 times / day
Route: intravenous
Route: multiple
Dose: 40 mg/m2, 1 times / day
Sources:
unhealthy, 42 years
Health Status: unhealthy
Age Group: 42 years
Sex: M+F
Sources:
Hepatotoxicity grade 3-4, 4 patients
40 mg/m2 1 times / day multiple, intravenous
MTD
Dose: 40 mg/m2, 1 times / day
Route: intravenous
Route: multiple
Dose: 40 mg/m2, 1 times / day
Sources:
unhealthy, 42 years
Health Status: unhealthy
Age Group: 42 years
Sex: M+F
Sources:
Myelosuppression grade 3, 2 patients
DLT
2 mg/m2 1 times / day multiple, intravenous
MTD
Dose: 2 mg/m2, 1 times / day
Route: intravenous
Route: multiple
Dose: 2 mg/m2, 1 times / day
Sources:
unhealthy, 51 years
Health Status: unhealthy
Age Group: 51 years
Sex: M+F
Sources:
Blood bilirubin decreased grade 1-2, 1 patient
6 mg 1 times / day multiple, oral
Highest studied dose
Dose: 6 mg, 1 times / day
Route: oral
Route: multiple
Dose: 6 mg, 1 times / day
Sources:
unhealthy, 60-76 years
Health Status: unhealthy
Age Group: 60-76 years
Sources:
Hypoalbuminemia grade 1-2, 1 patient
6 mg 1 times / day multiple, oral
Highest studied dose
Dose: 6 mg, 1 times / day
Route: oral
Route: multiple
Dose: 6 mg, 1 times / day
Sources:
unhealthy, 60-76 years
Health Status: unhealthy
Age Group: 60-76 years
Sources:
Nausea grade 1-2, 1 patient
6 mg 1 times / day multiple, oral
Highest studied dose
Dose: 6 mg, 1 times / day
Route: oral
Route: multiple
Dose: 6 mg, 1 times / day
Sources:
unhealthy, 60-76 years
Health Status: unhealthy
Age Group: 60-76 years
Sources:
Lymphopenia grade 3-4
6 mg 1 times / day multiple, oral
Highest studied dose
Dose: 6 mg, 1 times / day
Route: oral
Route: multiple
Dose: 6 mg, 1 times / day
Sources:
unhealthy, 60-76 years
Health Status: unhealthy
Age Group: 60-76 years
Sources:
Vomiting grade 2-3, 2 patients
70 mg/m2 1 times / day multiple, intravenous
Highest studied dose
Dose: 70 mg/m2, 1 times / day
Route: intravenous
Route: multiple
Dose: 70 mg/m2, 1 times / day
Sources:
unhealthy, child
Health Status: unhealthy
Age Group: child
Sources:
Maculopapular rash grade 3, 2 patients
70 mg/m2 1 times / day multiple, intravenous
Highest studied dose
Dose: 70 mg/m2, 1 times / day
Route: intravenous
Route: multiple
Dose: 70 mg/m2, 1 times / day
Sources:
unhealthy, child
Health Status: unhealthy
Age Group: child
Sources:
Hyperbilirubinemia grade 4, 2 patients
70 mg/m2 1 times / day multiple, intravenous
Highest studied dose
Dose: 70 mg/m2, 1 times / day
Route: intravenous
Route: multiple
Dose: 70 mg/m2, 1 times / day
Sources:
unhealthy, child
Health Status: unhealthy
Age Group: child
Sources:
Overview

Overview

CYP3A4CYP2C9CYP2D6hERG

OverviewOther

Other InhibitorOther SubstrateOther Inducer

Drug as victim

Drug as victim

TargetModalityActivityMetaboliteClinical evidence
no
Tox targets

Tox targets

TargetModalityActivityMetaboliteClinical evidence
PubMed

PubMed

TitleDatePubMed
Enhancement of the in vivo antitumor activity of clofarabine by 1-beta-D-[4-thio-arabinofuranosyl]-cytosine.
2009-07
Clofarabine in refractory Langerhans cell histiocytosis.
2008-11
Clofarabine: in search of combinations for the treatment of patients with high-risk acute myeloid leukemia.
2008-10-15
Clofarabine combinations as acute myeloid leukemia salvage therapy.
2008-10-15
Polyadenylation inhibition by the triphosphates of deoxyadenosine analogues.
2008-10
A randomized study of clofarabine versus clofarabine plus low-dose cytarabine as front-line therapy for patients aged 60 years and older with acute myeloid leukemia and high-risk myelodysplastic syndrome.
2008-09-01
Contribution of the drug transporter ABCG2 (breast cancer resistance protein) to resistance against anticancer nucleosides.
2008-09
Synthetic studies on formamidopyrimidines related to clofarabine.
2008-08
New drugs in acute myeloid leukemia.
2008-08
Acute myeloid leukemia in the elderly.
2008-08
Acute myeloid leukemia in the elderly: conventional and novel treatment approaches.
2008-07
Novel purine nucleoside analogues for hematological malignancies.
2008-06
Cytotoxic activities of nucleoside and nucleobase analog drugs in malignant mesothelioma: characterization of a novel nucleobase transport activity.
2008-05-15
Fatal skin and liver toxicity in a patient treated with clofarabine.
2008-05
Treating refractory leukemias in childhood, role of clofarabine.
2008-04
Potential role of novel nucleoside analogs in the treatment of acute myeloid leukemia.
2008-03
Clofarabine acts as radiosensitizer in vitro and in vivo by interfering with DNA damage response.
2008-01-01
Cytotoxic nucleoside analogues: different strategies to improve their clinical efficacy.
2008
The combination of clofarabine and cytarabine in pediatric relapsed acute lymphoblastic leukemia: a case report.
2008
Clofarabine: new drug. Children with acute lymphoblastic leukaemia: a last resort.
2007-12
Three new drugs for acute lymphoblastic leukemia: nelarabine, clofarabine, and forodesine.
2007-12
Pharmacogenetics of deoxycytidine kinase: identification and characterization of novel genetic variants.
2007-12
Clofarabine: past, present, and future.
2007-10
A phase 1 clinical-laboratory study of clofarabine followed by cyclophosphamide for adults with refractory acute leukemias.
2007-09-15
Clofarabine induced durable complete remission in heavily pretreated adolescents with relapsed and refractory leukemia.
2007-09
Saccharomyces cerevisiae emboli in an immunocompromised patient with relapsed acute myeloid leukaemia.
2007-07
Comparison of fast liquid chromatography/tandem mass spectrometric methods for simultaneous determination of cladribine and clofarabine in mouse plasma.
2007-06-28
Cell cycle effect on the activity of deoxynucleoside analogue metabolising enzymes.
2007-06-15
In vitro cytotoxicity of nelarabine, clofarabine and flavopiridol in paediatric acute lymphoblastic leukaemia.
2007-04
Advances in the management of AML in the elderly.
2007-03
Clofarabine for the treatment of acute lymphoblastic leukemia.
2007-02
Efficacy of low dose clofarabine in refractory precursor T- acute lymphoblastic leukemia.
2006-12
Nursing considerations for clofarabine in the treatment of acute lymphoblastic leukemia in children.
2006-12
Gateways to clinical trials.
2006-11
The activity and toxicity of low dose clofarabine against relapsed or refractory myeloma.
2006-11
Clofarabine and nelarabine: two new purine nucleoside analogs.
2006-11
Gateways to clinical trials.
2006-10
New directions in the treatment of mantle cell lymphoma: an overview.
2006-10
A tale of two drugs.
2006-10
Discovery and development of clofarabine: a nucleoside analogue for treating cancer.
2006-10
Clinical and pharmacokinetic study of clofarabine in chronic lymphocytic leukemia: strategy for treatment.
2006-07-01
Pharmacological and clinical studies on purine nucleoside analogs--new anticancer agents.
2006-05
Phase II study of clofarabine in pediatric patients with refractory or relapsed acute lymphoblastic leukemia.
2006-04-20
Treatment of older patients with acute myeloid leukemia--new agents.
2006-04
New drugs 06, part I.
2006-02
The structure of human deoxycytidine kinase in complex with clofarabine reveals key interactions for prodrug activation.
2006-02
Purine nucleoside analogs as immunosuppressive and antineoplastic agents: mechanism of action and clinical activity.
2006
New agents for the treatment of acute myeloid leukemia.
2006
Nucleosides as anticancer agents: from concept to the clinic.
2005
Effects of 2-chloro-9-(2-deoxy-2-fluoro-beta-D-arabinofuranosyl)adenine on K562 cellular metabolism and the inhibition of human ribonucleotide reductase and DNA polymerases by its 5'-triphosphate.
1991-05-01
Patents

Patents

Sample Use Guides

The recommended pediatric dose is 52 mg/m2 given as an intravenous infusion over 2 hours daily for 5 consecutive days of a 28-day cycle. Repeat cycles every 2-6 week.
Route of Administration: Intravenous
HL-60 cells or HL/ara-C20 cells were incubated with different concentrations of clofarabine for 72 h. The 50%-growth-inhibitory concentration IC50 was 50 nM for HL60 and 320 nM for HL/ara-C20 cells.
Name Type Language
Clofarabine triphosphate
Common Name English
2-Chloro-9-[2-deoxy-2-fluoro-5-O-[hydroxy[[hydroxy(phosphonooxy)phosphinyl]oxy]phosphinyl]-?-D-arabinofuranosyl]-9H-purin-6-amine
Preferred Name English
9H-Purin-6-amine, 2-chloro-9-[2-deoxy-2-fluoro-5-O-[hydroxy[[hydroxy(phosphonooxy)phosphinyl]oxy]phosphinyl]-?-D-arabinofuranosyl]-
Systematic Name English
Code System Code Type Description
PUBCHEM
9915350
Created by admin on Wed Apr 02 15:39:01 GMT 2025 , Edited by admin on Wed Apr 02 15:39:01 GMT 2025
PRIMARY
FDA UNII
YPJ8ZV99ZP
Created by admin on Wed Apr 02 15:39:01 GMT 2025 , Edited by admin on Wed Apr 02 15:39:01 GMT 2025
PRIMARY
CAS
134646-41-6
Created by admin on Wed Apr 02 15:39:01 GMT 2025 , Edited by admin on Wed Apr 02 15:39:01 GMT 2025
PRIMARY
EPA CompTox
DTXSID00432746
Created by admin on Wed Apr 02 15:39:01 GMT 2025 , Edited by admin on Wed Apr 02 15:39:01 GMT 2025
PRIMARY